Here is a list of all class members with links to the classes they belong to:
- a -
- a
: Atom
, Event
, FixedForceAtom
, FixedSpringAtom
- A
: JammingTreeRot
- a1
: AngleGrouping
, BondGrouping
, DihedralGrouping
, ForcePair
, ForcePairX
- a2
: AngleGrouping
, BondGrouping
, DihedralGrouping
, ForcePair
, ForcePairX
- a3
: AngleGrouping
, DihedralGrouping
- a4
: DihedralGrouping
- add()
: AngleTriples
, BondPairs
, Charges
, CNodePath
, Collection
, Connectivity
, Dihedrals
, FixedForce
, FixedForceRegion
, FixedSpring
, NeighborList
, NListed< A, P >
, NListedVirial< A, P >
, RandomForce
, SCBoxed< A, P >
, SimpleListed< A, P >
, SoftWall
, SoftWallCylinder
, SubGroup
- add_constraint()
: Collection
- add_edge()
: Connectivity
- add_forced()
: AngleTriples
, BondPairs
- add_interaction()
: Collection
- add_omega()
: AtomGroup
- add_pair()
: PairList
- add_tracker()
: Collection
- add_velocity()
: AtomGroup
- affine()
: LeesEdwardsBox
- afrac
: CollectionNLCG
, CollectionNLCGV
- al
: CollectionNLCG
, CollectionNLCGV
- all_pairs()
: Grid
- alpha
: CollectionNLCG
, CollectionNLCGV
- alphamax
: CollectionNLCG
, CollectionNLCGV
- alphavmax
: CollectionNLCG
, CollectionNLCGV
- angle()
: Vector2< T >
, Vector3< T >
- AngleGrouping()
: AngleGrouping
- AngleTriples()
: AngleTriples
- angular_momentum()
: AtomGroup
, Collection
- apply_force()
: SCPair
- apply_forces()
: Constraint
, CoordCOMConstraint
, CoordConstraint
, DistConstraint
, LinearConstraint
, RelativeConstraint
, RigidConstraint
- apply_positions()
: Constraint
, CoordCOMConstraint
, CoordConstraint
, DistConstraint
, LinearConstraint
, RelativeConstraint
, RigidConstraint
- apply_velocities()
: Constraint
, CoordCOMConstraint
, CoordConstraint
, DistConstraint
, LinearConstraint
, RelativeConstraint
, RigidConstraint
- Array()
: Array< T, N >
- as_packing()
: pyparm.packmin.Minimizer
- assigned
: JammingList
- atom1
: ChargePair
, EisMclachlanPair
, GridIterator
, GridPairedIterator
, LennardJonesCutPair
, LJAttractCutPair
, LJAttractFixedRepulsePair
, LJAttractRepulsePair
, LJishPair
, LJRepulsePair
, LoisLinPair
, LoisOhernPair
, RepulsionDragPair
, RepulsionPair
- atom2
: ChargePair
, EisMclachlanPair
, GridIterator
, GridPairedIterator
, LennardJonesCutPair
, LJAttractCutPair
, LJAttractFixedRepulsePair
, LJAttractRepulsePair
, LJishPair
, LJRepulsePair
, LoisLinPair
, LoisOhernPair
, RepulsionDragPair
, RepulsionPair
- atom_list()
: NListed< A, P >
, SCBoxed< A, P >
, SimpleListed< A, P >
- AtomID()
: AtomID
- AtomIter()
: AtomIter
- AtomRef()
: AtomRef
- atoms
: Charges
, Collection
, ContactTracker
, EnergyTracker
, FixedForce
, FixedForceRegion
, FixedSpring
, Grid
, ISFTracker
, NeighborList
, NListed< A, P >
, pyparm.packmin.Minimizer
, RDiffs
, RsqTracker
, SCBoxed< A, P >
, SimpleListed< A, P >
, SmoothLocs
, SubGroup
- atomsizes
: CollectionCD
, CollectionCDgrid
- AtomVec()
: AtomVec
- attract
: LJAttractFixedRepulsePair
- axis
: SoftWallCylinder