ParM
parm
A molecular dynamics library
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#include <interaction.hpp>
Public Member Functions | |
SCSpringList (SCAtomVec *scs, flt eps, flt sig, flt l) | |
Create an SCSpringList based on scs, using an epsilon of eps, a diameter of sigma, and a "length" of l, where l is cap center-to-cap center distance. More... | |
SCSpringList (SCAtomVec *scs, flt eps, flt sig, vector< flt > ls) | |
flt | energy (Box &box) |
Potential energy due to this Interaction. More... | |
void | set_forces (Box &box) |
flt | set_forces_get_pressure (Box &box) |
Set forces (Atom.f ) and return \(P = \sum_{\left<i,j \right>} \vec r_{ij} \cdot \vec F_{ij}\) at the same time (see pressure() ). More... | |
flt | pressure (Box &box) |
Partial pressure due to this Interaction. More... | |
Matrix | set_forces_get_stress (Box &box) |
Matrix | stress (Box &box) |
The force-moment tensor for the current simulation: More... | |
void | ignore (uint n1, uint n2) |
flt | volume () |
flt | phi (Box &box) |
void | ignore (AtomID a1, AtomID a2) |
~SCSpringList () | |
Public Member Functions inherited from Interaction | |
virtual | ~Interaction () |
Create an SCSpringList based on scs, using an epsilon of eps, a diameter of sigma, and a "length" of l, where l is cap center-to-cap center distance.
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inline |
Potential energy due to this Interaction.
Implements Interaction.
Partial pressure due to this Interaction.
\(P = \sum_{\left<i,j \right>} \vec r_{ij} \cdot \vec F_{ij}\), or equivalently \(P = \sum_i \vec r_i \cdot \vec F_i\)
Note that the full pressure involves all interactions and temperature, and needs to be normalized by \( \frac{1}{dV} \) where \(d\) is the number of dimensions and \(V\) is the volume.
Implements Interaction.
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virtual |
Implements Interaction.
Set forces (Atom.f
) and return \(P = \sum_{\left<i,j \right>} \vec r_{ij} \cdot \vec F_{ij}\) at the same time (see pressure()
).
Reimplemented from Interaction.
The force-moment tensor for the current simulation:
\(\tau^{\alpha \beta} = \sum_{\left<i,j \right>} r_{ij}^\alpha F_{ij}^\beta\).
At \(T=0\), the stress tensor \(\Sigma = \frac{1}{dV} \tau \).
Reimplemented from Interaction.
flt SCSpringList::volume | ( | ) |