ParM
parm
A molecular dynamics library
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This is the complete list of members for StaticCollec, including all inherited members.
add(sptr< Interaction > a) | Collection | inline |
add(sptr< StateTracker > a) | Collection | inline |
add(sptr< Constraint > a) | Collection | inline |
add_constraint(sptr< Constraint > c) | Collection | inline |
add_interaction(sptr< Interaction > inter) | Collection | inline |
add_tracker(sptr< StateTracker > track) | Collection | inline |
angular_momentum(const Vec &loc) | Collection | inline |
angular_momentum() | Collection | inline |
atoms | Collection | protected |
box | Collection | protected |
Collection(sptr< Box > box, sptr< AtomGroup > atoms, vector< sptr< Interaction > > interactions=vector< sptr< Interaction > >(), vector< sptr< StateTracker > > trackers=vector< sptr< StateTracker > >(), vector< sptr< Constraint > > constraints=vector< sptr< Constraint > >(), bool should_initialize=true) | Collection | |
com() | Collection | inline |
com_velocity() | Collection | inline |
constraints | Collection | protected |
degrees_of_freedom() | Collection | |
energy() | Collection | |
get_box() | Collection | inline |
get_interactions() | Collection | inline |
gyradius() | Collection | |
initialize() | Collection | virtual |
interactions | Collection | protected |
kinetic_energy() | Collection | inlinevirtual |
potential_energy() | Collection | |
pressure() | Collection | virtual |
reset_com_velocity() | Collection | inline |
reset_L() | Collection | inline |
scale_velocities(flt scaleby) | Collection | |
scale_velocities_to_energy(flt E) | Collection | |
scale_velocities_to_temp(flt T, bool minuscomv=true) | Collection | |
set_forces(bool constraints_and_a=true) | Collection | virtual |
set_forces_get_pressure(bool constraints_and_a=true) | Collection | protectedvirtual |
StaticCollec(sptr< Box > box, sptr< AtomGroup > atoms, vector< sptr< Interaction > > interactions=vector< sptr< Interaction > >(), vector< sptr< StateTracker > > trackers=vector< sptr< StateTracker > >(), vector< sptr< Constraint > > constraints=vector< sptr< Constraint > >()) | StaticCollec | inline |
temp(bool minuscomv=true) | Collection | virtual |
timestep() | StaticCollec | inlinevirtual |
trackers | Collection | protected |
update() | StaticCollec | inline |
update_constraint_forces() | Collection | protected |
update_constraint_positions() | Collection | protected |
update_constraint_velocities() | Collection | protected |
update_trackers() | Collection | protected |
virial() | Collection | virtual |
~Collection() | Collection | inlinevirtual |