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ParM
parm
A molecular dynamics library
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#include <interaction.hpp>
Public Member Functions | |
| COMSpring (AtomGroup *g1, AtomGroup *g2, flt k, flt x0=0) | |
| flt | energy (Box &box) |
| Potential energy due to this Interaction. More... | |
| void | set_forces (Box &box) |
| flt | pressure (Box &box) |
| Partial pressure due to this Interaction. More... | |
Public Member Functions inherited from Interaction | |
| virtual flt | set_forces_get_pressure (Box &box) |
Set forces (Atom.f) and return \(P = \sum_{\left<i,j \right>} \vec r_{ij} \cdot \vec F_{ij}\) at the same time (see pressure()). More... | |
| virtual Matrix | stress (Box &box) |
| The force-moment tensor for the current simulation: More... | |
| virtual | ~Interaction () |
Protected Attributes | |
| AtomGroup * | g1 |
| AtomGroup * | g2 |
| flt | k |
| flt | x0 |
| flt | m1 |
| flt | m2 |
Potential energy due to this Interaction.
Implements Interaction.
Partial pressure due to this Interaction.
\(P = \sum_{\left<i,j \right>} \vec r_{ij} \cdot \vec F_{ij}\), or equivalently \(P = \sum_i \vec r_i \cdot \vec F_i\)
Note that the full pressure involves all interactions and temperature, and needs to be normalized by \( \frac{1}{dV} \) where \(d\) is the number of dimensions and \(V\) is the volume.
Implements Interaction.
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inlinevirtual |
Implements Interaction.
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1.8.10