CollectionNLCG Member List

This is the complete list of members for CollectionNLCG, including all inherited members.

add(sptr< Interaction > a)	Collection	inline
add(sptr< StateTracker > a)	Collection	inline
add(sptr< Constraint > a)	Collection	inline
add_constraint(sptr< Constraint > c)	Collection	inline
add_interaction(sptr< Interaction > inter)	Collection	inline
add_tracker(sptr< StateTracker > track)	Collection	inline
afrac	CollectionNLCG
al	CollectionNLCG
alpha	CollectionNLCG
alphamax	CollectionNLCG
alphavmax	CollectionNLCG
angular_momentum(const Vec &loc)	Collection	inline
angular_momentum()	Collection	inline
atoms	Collection	protected
beta	CollectionNLCG
betaused	CollectionNLCG
box	Collection	protected
Collection(sptr< Box > box, sptr< AtomGroup > atoms, vector< sptr< Interaction > > interactions=vector< sptr< Interaction > >(), vector< sptr< StateTracker > > trackers=vector< sptr< StateTracker > >(), vector< sptr< Constraint > > constraints=vector< sptr< Constraint > >(), bool should_initialize=true)	Collection
CollectionNLCG(sptr< OriginBox > box, sptr< AtomGroup > atoms, const flt dt, const flt P0, vector< sptr< Interaction > > interactions=vector< sptr< Interaction > >(), vector< sptr< StateTracker > > trackers=vector< sptr< StateTracker > >(), vector< sptr< Constraint > > constraints=vector< sptr< Constraint > >(), const flt kappa=10.0, const flt kmax=1000, const uint secmax=40, const flt seceps=1e-20)	CollectionNLCG
com()	Collection	inline
com_velocity()	Collection	inline
constraints	Collection	protected
degrees_of_freedom()	Collection
descend()	CollectionNLCG
dt	CollectionNLCG
dxmax	CollectionNLCG
dxsum	CollectionNLCG
energy()	Collection
fdota()	CollectionNLCG
fdotf()	CollectionNLCG
fdotv()	CollectionNLCG
fl	CollectionNLCG
get_box()	Collection	inline
get_interactions()	Collection	inline
get_length_squared()	CollectionNLCG
get_pressure_goal()	CollectionNLCG	inline
gyradius()	Collection
hamiltonian()	CollectionNLCG
initialize()	Collection	virtual
interactions	Collection	protected
k	CollectionNLCG
kappa	CollectionNLCG
kinetic_energy()	CollectionNLCG	virtual
kmax	CollectionNLCG
Knew	CollectionNLCG
maxdV	CollectionNLCG
P0	CollectionNLCG
potential_energy()	Collection
pressure()	CollectionNLCG	virtual
reset()	CollectionNLCG
reset_com_velocity()	Collection	inline
reset_L()	Collection	inline
scale_velocities(flt scaleby)	Collection
scale_velocities_to_energy(flt E)	Collection
scale_velocities_to_temp(flt T, bool minuscomv=true)	Collection
sec	CollectionNLCG
seceps	CollectionNLCG
secmax	CollectionNLCG
set_dt(flt newdt)	CollectionNLCG	inline
set_forces(bool constraints_and_a=true)	CollectionNLCG	inlinevirtual
set_forces(bool constraints_and_a, bool setV)	CollectionNLCG
set_forces_get_pressure(bool constraints_and_a=true)	Collection	protectedvirtual
set_kappa(flt k)	CollectionNLCG	inline
set_max_alpha(flt a)	CollectionNLCG	inline
set_max_alpha_fraction(flt a)	CollectionNLCG	inline
set_max_dx(flt d)	CollectionNLCG	inline
set_max_step(flt m)	CollectionNLCG	inline
set_pressure_goal(flt P)	CollectionNLCG	inline
stepmax	CollectionNLCG
stepx(flt dx)	CollectionNLCG	virtual
temp(bool minuscomv=true)	Collection	virtual
timestep()	CollectionNLCG	virtual
trackers	Collection	protected
update_constraint_forces()	Collection	protected
update_constraint_positions()	Collection	protected
update_constraint_velocities()	Collection	protected
update_trackers()	Collection	protected
vdotv()	CollectionNLCG
virial()	Collection	virtual
vl	CollectionNLCG
~Collection()	Collection	inlinevirtual