ParM  parm
A molecular dynamics library
CollectionCDgrid Member List

This is the complete list of members for CollectionCDgrid, including all inherited members.

add(sptr< Interaction > a)Collectioninline
add(sptr< StateTracker > a)Collectioninline
add(sptr< Constraint > a)Collectioninline
add_constraint(sptr< Constraint > c)Collectioninline
add_interaction(sptr< Interaction > inter)Collectioninline
add_tracker(sptr< StateTracker > track)Collectioninline
angular_momentum(const Vec &loc)Collectioninline
angular_momentum()Collectioninline
atomsCollectionprotected
atomsizesCollectionCDgrid
boxCollectionprotected
Collection(sptr< Box > box, sptr< AtomGroup > atoms, vector< sptr< Interaction > > interactions=vector< sptr< Interaction > >(), vector< sptr< StateTracker > > trackers=vector< sptr< StateTracker > >(), vector< sptr< Constraint > > constraints=vector< sptr< Constraint > >(), bool should_initialize=true)Collection
CollectionCDgrid(sptr< OriginBox > box, sptr< AtomGroup > atoms, const flt dt, vector< flt > sizes=vector< flt >(), vector< sptr< Interaction > > interactions=vector< sptr< Interaction > >(), vector< sptr< StateTracker > > trackers=vector< sptr< StateTracker > >(), vector< sptr< Constraint > > constraints=vector< sptr< Constraint > >())CollectionCDgridinline
com()Collectioninline
com_velocity()Collectioninline
constraintsCollectionprotected
curtCollectionCDgrid
degrees_of_freedom()Collection
dtCollectionCDgrid
edge_epsilonCollectionCDgrid
energy()Collection
eventsCollectionCDgrid
events_processed()CollectionCDgridinline
get_box()Collectioninline
get_epsilon()CollectionCDgridinline
get_grid()CollectionCDgridinline
get_interactions()Collectioninline
gridCollectionCDgrid
gridtCollectionCDgrid
gyradius()Collection
initialize()Collectionvirtual
interactionsCollectionprotected
kinetic_energy()Collectioninlinevirtual
line_advance(flt deltat)CollectionCDgrid
next_event(AtomID a)CollectionCDgrid
numeventsCollectionCDgrid
potential_energy()Collection
pressure()Collectionvirtual
reset_com_velocity()Collectioninline
reset_events(bool force=true)CollectionCDgrid
reset_L()Collectioninline
reset_velocities(flt T)CollectionCDgrid
scale_velocities(flt scaleby)Collection
scale_velocities_to_energy(flt E)Collection
scale_velocities_to_temp(flt T, bool minuscomv=true)Collection
set_epsilon(flt eps)CollectionCDgridinline
set_forces(bool constraints_and_a=true)Collectionvirtual
set_forces_get_pressure(bool constraints_and_a=true)Collectionprotectedvirtual
take_step(flt tlim=-1)CollectionCDgrid
temp(bool minuscomv=true)Collectionvirtual
timestep()CollectionCDgridvirtual
trackersCollectionprotected
update_constraint_forces()Collectionprotected
update_constraint_positions()Collectionprotected
update_constraint_velocities()Collectionprotected
update_grid(bool force=true)CollectionCDgrid
update_trackers()Collectionprotected
virial()Collectionvirtual
~Collection()Collectioninlinevirtual