This is the complete list of members for CollectionNLCGV, including all inherited members.
| add(sptr< Interaction > a) | Collection | inline |
| add(sptr< StateTracker > a) | Collection | inline |
| add(sptr< Constraint > a) | Collection | inline |
| add_constraint(sptr< Constraint > c) | Collection | inline |
| add_interaction(sptr< Interaction > inter) | Collection | inline |
| add_tracker(sptr< StateTracker > track) | Collection | inline |
| afrac | CollectionNLCGV | |
| al | CollectionNLCGV | |
| alpha | CollectionNLCGV | |
| alphamax | CollectionNLCGV | |
| alphavmax | CollectionNLCGV | |
| angular_momentum(const Vec &loc) | Collection | inline |
| angular_momentum() | Collection | inline |
| atoms | Collection | protected |
| beta | CollectionNLCGV | |
| betaused | CollectionNLCGV | |
| box | Collection | protected |
| Collection(sptr< Box > box, sptr< AtomGroup > atoms, vector< sptr< Interaction > > interactions=vector< sptr< Interaction > >(), vector< sptr< StateTracker > > trackers=vector< sptr< StateTracker > >(), vector< sptr< Constraint > > constraints=vector< sptr< Constraint > >(), bool should_initialize=true) | Collection | |
| CollectionNLCGV(sptr< Box > box, sptr< AtomGroup > atoms, const flt dt, vector< sptr< Interaction > > interactions=vector< sptr< Interaction > >(), vector< sptr< StateTracker > > trackers=vector< sptr< StateTracker > >(), vector< sptr< Constraint > > constraints=vector< sptr< Constraint > >(), const flt kmax=1000, const uint secmax=10, const flt seceps=1e-4) | CollectionNLCGV | |
| com() | Collection | inline |
| com_velocity() | Collection | inline |
| constraints | Collection | protected |
| degrees_of_freedom() | Collection | |
| descend() | CollectionNLCGV | |
| dt | CollectionNLCGV | |
| dxmax | CollectionNLCGV | |
| dxsum | CollectionNLCGV | |
| energy() | Collection | |
| fdota() | CollectionNLCGV | |
| fdotf() | CollectionNLCGV | |
| fdotv() | CollectionNLCGV | |
| fl | CollectionNLCGV | |
| get_box() | Collection | inline |
| get_interactions() | Collection | inline |
| gyradius() | Collection | |
| initialize() | Collection | virtual |
| interactions | Collection | protected |
| k | CollectionNLCGV | |
| kinetic_energy() | Collection | inlinevirtual |
| kmax | CollectionNLCGV | |
| Knew | CollectionNLCGV | |
| potential_energy() | Collection | |
| pressure() | CollectionNLCGV | virtual |
| reset() | CollectionNLCGV | |
| reset_com_velocity() | Collection | inline |
| reset_L() | Collection | inline |
| scale_velocities(flt scaleby) | Collection | |
| scale_velocities_to_energy(flt E) | Collection | |
| scale_velocities_to_temp(flt T, bool minuscomv=true) | Collection | |
| sec | CollectionNLCGV | |
| seceps | CollectionNLCGV | |
| secmax | CollectionNLCGV | |
| set_dt(flt newdt) | CollectionNLCGV | inline |
| set_forces(bool constraints_and_a=true) | Collection | virtual |
| set_forces_get_pressure(bool constraints_and_a=true) | Collection | protectedvirtual |
| set_max_alpha(flt a) | CollectionNLCGV | inline |
| set_max_alpha_fraction(flt a) | CollectionNLCGV | inline |
| set_max_dx(flt d) | CollectionNLCGV | inline |
| set_max_step(flt m) | CollectionNLCGV | inline |
| stepmax | CollectionNLCGV | |
| stepx(flt dx) | CollectionNLCGV | |
| temp(bool minuscomv=true) | Collection | virtual |
| timestep() | CollectionNLCGV | virtual |
| trackers | Collection | protected |
| update_constraint_forces() | Collection | protected |
| update_constraint_positions() | Collection | protected |
| update_constraint_velocities() | Collection | protected |
| update_trackers() | Collection | protected |
| vdotv() | CollectionNLCGV | |
| virial() | Collection | virtual |
| vl | CollectionNLCGV | |
| ~Collection() | Collection | inlinevirtual |
1.8.10
