ParM  parm
A molecular dynamics library
CollectionDamped Member List

This is the complete list of members for CollectionDamped, including all inherited members.

add(sptr< Interaction > a)Collectioninline
add(sptr< StateTracker > a)Collectioninline
add(sptr< Constraint > a)Collectioninline
add_constraint(sptr< Constraint > c)Collectioninline
add_interaction(sptr< Interaction > inter)Collectioninline
add_tracker(sptr< StateTracker > track)Collectioninline
angular_momentum(const Vec &loc)Collectioninline
angular_momentum()Collectioninline
atomsCollectionprotected
boxCollectionprotected
c0CollectionDampedprotected
c1CollectionDampedprotected
c2CollectionDampedprotected
change_damping(const flt damp)CollectionDampedinline
Collection(sptr< Box > box, sptr< AtomGroup > atoms, vector< sptr< Interaction > > interactions=vector< sptr< Interaction > >(), vector< sptr< StateTracker > > trackers=vector< sptr< StateTracker > >(), vector< sptr< Constraint > > constraints=vector< sptr< Constraint > >(), bool should_initialize=true)Collection
CollectionDamped(sptr< Box > box, sptr< AtomGroup > atoms, const flt dt, const flt damping, vector< sptr< Interaction > > interactions=vector< sptr< Interaction > >(), vector< sptr< StateTracker > > trackers=vector< sptr< StateTracker > >(), vector< sptr< Constraint > > constraints=vector< sptr< Constraint > >())CollectionDamped
com()Collectioninline
com_velocity()Collectioninline
constraintsCollectionprotected
dampingCollectionDampedprotected
degrees_of_freedom()Collection
dtCollectionDampedprotected
energy()Collection
get_box()Collectioninline
get_interactions()Collectioninline
gyradius()Collection
initialize()Collectionvirtual
interactionsCollectionprotected
kinetic_energy()Collectioninlinevirtual
potential_energy()Collection
pressure()Collectionvirtual
reset_com_velocity()Collectioninline
reset_L()Collectioninline
scale_velocities(flt scaleby)Collection
scale_velocities_to_energy(flt E)Collection
scale_velocities_to_temp(flt T, bool minuscomv=true)Collection
set_constants()CollectionDampedprotected
set_dt(const flt newdt)CollectionDampedinline
set_forces(bool constraints_and_a=true)Collectionvirtual
set_forces_get_pressure(bool constraints_and_a=true)Collectionprotectedvirtual
temp(bool minuscomv=true)Collectionvirtual
timestep()CollectionDampedvirtual
trackersCollectionprotected
update_constraint_forces()Collectionprotected
update_constraint_positions()Collectionprotected
update_constraint_velocities()Collectionprotected
update_trackers()Collectionprotected
virial()Collectionvirtual
~Collection()Collectioninlinevirtual