CollectionCD Member List

This is the complete list of members for CollectionCD, including all inherited members.

add(sptr< Interaction > a)	Collection	inline
add(sptr< StateTracker > a)	Collection	inline
add(sptr< Constraint > a)	Collection	inline
add_constraint(sptr< Constraint > c)	Collection	inline
add_interaction(sptr< Interaction > inter)	Collection	inline
add_tracker(sptr< StateTracker > track)	Collection	inline
angular_momentum(const Vec &loc)	Collection	inline
angular_momentum()	Collection	inline
atoms	Collection	protected
atomsizes	CollectionCD	protected
box	Collection	protected
Collection(sptr< Box > box, sptr< AtomGroup > atoms, vector< sptr< Interaction > > interactions=vector< sptr< Interaction > >(), vector< sptr< StateTracker > > trackers=vector< sptr< StateTracker > >(), vector< sptr< Constraint > > constraints=vector< sptr< Constraint > >(), bool should_initialize=true)	Collection
CollectionCD(sptr< OriginBox > box, sptr< AtomGroup > atoms, const flt dt, vector< flt > sizes=vector< flt >(), vector< sptr< Interaction > > interactions=vector< sptr< Interaction > >(), vector< sptr< StateTracker > > trackers=vector< sptr< StateTracker > >(), vector< sptr< Constraint > > constraints=vector< sptr< Constraint > >())	CollectionCD	inline
com()	Collection	inline
com_velocity()	Collection	inline
constraints	Collection	protected
curt	CollectionCD	protected
degrees_of_freedom()	Collection
dt	CollectionCD	protected
energy()	Collection
events	CollectionCD	protected
events_processed()	CollectionCD	inline
get_box()	Collection	inline
get_interactions()	Collection	inline
gyradius()	Collection
initialize()	Collection	virtual
interactions	Collection	protected
kinetic_energy()	Collection	inlinevirtual
line_advance(flt deltat)	CollectionCD	protected
numevents	CollectionCD	protected
potential_energy()	Collection
pressure()	Collection	virtual
reset_com_velocity()	Collection	inline
reset_events()	CollectionCD	protected
reset_L()	Collection	inline
reset_velocities(flt T)	CollectionCD
scale_velocities(flt scaleby)	Collection
scale_velocities_to_energy(flt E)	Collection
scale_velocities_to_temp(flt T, bool minuscomv=true)	Collection
set_forces(bool constraints_and_a=true)	Collection	virtual
set_forces_get_pressure(bool constraints_and_a=true)	Collection	protectedvirtual
take_step(flt tlim=-1)	CollectionCD
temp(bool minuscomv=true)	Collection	virtual
timestep()	CollectionCD	virtual
trackers	Collection	protected
update_constraint_forces()	Collection	protected
update_constraint_positions()	Collection	protected
update_constraint_velocities()	Collection	protected
update_trackers()	Collection	protected
virial()	Collection	virtual
~Collection()	Collection	inlinevirtual